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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … story from the issue — Machine learning-based prediction of activity and substrate specificity for OleA enzymes in the …
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SPRUCE-ing Up Science
… is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … from northern California and one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … Opportunity Program (ETOP) , researchers have developed and improved upon a tool that combines existing DNA sequence … both manual and automated binning methods also extends to harnessing future binning tools. DAS Tool is an example of …
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Webinar: MycoCosm Tutorial
… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … While are still working on finalizing the tree and related publication the tree is still in development and not … download file formats are predefined but can certainly be improved in future developments of the portal. 14.  Q: Has …
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Mapping Heat Resistance in Yeasts
… yeast Saccharomyces cerevisiae , allowing this species to grow better than its closest relative S. paradoxus at … challenges in understanding wild populations is that tests to find associations between genotype – an organism’s … Facility of Lawrence Berkeley National Laboratory, aim to improve our understanding of fungal diversity by sequencing …
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … the cotton genomes provides breeders with insights on crop improvements at a genetic level, including why having … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Mike Sneddon
… annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for … and AI for large-scale genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at Predicine, an NGS-based …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … genetic information that crop breeders can use to improve sugarcane varieties and advance a sustainable …
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