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Finding the Fermenters
… to convert food into energy. However, in environments with little or no oxygen, life had found other ways to … form of metabolism, researchers recently compiled a list of with more than 8,300 organisms from multiple sources, … Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism from the literature. They then …
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New and Improved: Eucalyptus Reference is Now Accessible
… July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus … of eucalyptus. The trees are fast-growing plantation crops that supply wood and fiber for various industrial uses … targeted genetic breeding of eucalypts as woody biomass crops for the bioeconomy. The work contributes to the …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less salt — near the surface where algae grow. Armed with a better understanding of the alga’s stress resistance … can explore how to better manage the growth, yield and climate resilience of algae — for potential use as biomass …
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Extracting the Secrets of Secondary Metabolites
… payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers with a powerful addition to their toolkit to study gene … the help of CRAGE, the pairing proved to rapidly confirm enhanced production of 22 metabolites from six biosynthetic …
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Webinar: MycoCosm Tutorial
… on the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … While are still working on finalizing the tree and related publication the tree is still in development and not … search for genes/proteins by their commonly used names in publications? e.g. erg-1 (instead of the Gene ID etc., which …
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A Community Resource for Secondary Metabolite Researchers
… an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … experience in developing a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and … that methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” … data, which in turn can help to understand its impact on climate along earth history.” Marker genes for diverse …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, Berkeley. Nowadays, … that could help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the …
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Data Ecosystem
… that deepen our understanding of how organisms interact with each other and with their environment and help unravel these complexities  … in a comprehensive, multi-disciplinary way. We also work with our partners to ensure platforms are future-ready for … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the …
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Eelgrass Proves to Be Much Younger Than We Thought
… that figure is likely closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean … habitats are more vulnerable to the effects of a changing climate. Knowing more about how eelgrass evolved can help … The plant can thrive in both frigid and tropical climates, growing off the coasts of Alaska and Norway, as …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three … agricultural staples and candidate bioenergy feedstock crops, are recent polyploids. Crop breeders have harnessed …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, …
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