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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly …
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Emiley Eloe-Fadrosh
… ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining … ( magna cum laude ) PhD, Marine Biology, Scripps Institution of Oceanography …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … Duke University, published their research related to how bacteria that colonize the roots of sphagnum work to … . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Leo Baumgart
… San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible for … which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing … training in bioinformatics, Lawrence Berkeley National Lab …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to … from the JGI and EMSL in one proposed research project. In the same proposal, researchers can also request … JGI : For general questions, contact  Christa Pennacchio , Project Management Office. For questions about the …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature … The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the … Through a Laboratory-Directed Research and Development project supported by Berkeley Lab, JGI and Foundry …
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Frederik Schulz
… the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in … to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded … 29–37. Schulz et al. (2017) Towards a balanced view of the bacterial tree of life. Microbiome. 5 (1), 1-6 Google Scholar …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Training the Next Generation of Talent
… Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … with postdoctoral fellow Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, …
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DAP-seq Drives Robust Mapping of Gene Regulation
… 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said … for studies on organisms with smaller genomes, such as bacteria and certain fungi. Scaling the technology’s … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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