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Over the course of eight weeks this past summer, 10 students from UC … genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 students have contributed to the research of JGI …

… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …

Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies …

… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … understand the ERD process.  … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of …

Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or … options include SnapGene . … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> Save As …

… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s … Phytozome .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …

… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Facility, is supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  …

… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … Research and operated under Contract Numbers DE-AC02–05CH11231 (JGI) and DE-AC05–76RL01830 (EMSL). This work was funded …

… representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list … Overview and Joint Genome Institute Plant Program Update 6:33 PM Comparative Genomic and Transcriptomic Analyses for …

… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the …

Following the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement … Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … 2023. JGI plant gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the …

A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we seek to … and mathematics (STEM) workforce. In doing so, it is our ambition to further develop a more diverse and inclusive …