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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better understand the nature … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better understand the nature … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
Learn more
Tour the IGB
… pointing device to zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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Outreach Stories
Interested in reading more JGI intern and mentor success stories? Read more below. …
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David Goodstein
… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert … of Brachypodium hybridum and its diploid progenitors. Nature Communications 11, 1. Gordon et al., 2017.  Extensive …
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Jeremy Schmutz
IL … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. Nature 628, 804–810. Sreedasyam, A., Plott, C., MdS Hossain, J. T., Lovell, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … possibilities, and maximizes returns from the demanding nature of SIP experiments.  Especially as machine learning … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the …
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2025 NeLLi Symposium
Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions … 48″ wide or less to ensure 2 posters fitting on the boards. JGI posters are typically printed in the ARCH E size which … note that the cancellation policy below is as follows:  100% Refund upon request prior to 08/31/2025 50% Refund upon …
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Accelerating Metagenomics Discoveries with Deep Learning
… algorithms, inspired by communication networks found in nature, allows machines to “learn” features. State of the … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …
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