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Tanja Woyke
After studying the mechanism of action of antifungal natural products … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, … of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … minor capsid proteins (MCP and mCP, respectively), ATPase involved in DNA packaging, and PRO, a cysteine protease … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the …
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User Support
The JGI Project Management Office carries out a number of … collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. … IAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives for the …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Compendium of Metabolomic and Genomic Datasets for Cyanobacteria: Mined the Gap
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … between required information and terms, such as isotopes involved in an experiment, and recommended information, such …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … their expertise in developing and managing public viral genomics resources such as analytical tools and data …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … postdoctoral fellowship at NERSC and LBNL’s Computational Research Division.. As a postdoc, her research focused on …
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