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The Megadata of Lake Mendota - Part 2: Souped Up Computing
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JGI@25: Stories from Intern Alumni
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the next five years. It also includes more than 130 implementation milestones to help track and drive … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and mentor Hualan Liu, Building Expression Host in Bacilli Class using CRAGE Technology Emerald Nash and mentor Jonelle … of Polintoviruses Josue Duque and mentor Miguel Romero, Classification and Analysis of Eukaryotic MAGs from Novel … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … Kunakom S, Otani H, Udwary DW, Doering …
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Zhong Wang
DOE’s most challenging problems. … PhD Cell Biology. Duke University MS Developmental Biology, Chinese Academy of Sciences, Shanghai, China BS Microbiology, Shandong University, Ji’nan, China … A complete list is available on …
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Benjamin Cole
… technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … and user-centered design efforts. … PhD Applied Mathematics University of Washington, Seattle BA Applied Mathematics University of California, Berkeley MBA Haas School of …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… take in more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by … dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … Alliance of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department …
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A Community Resource for Secondary Metabolite Researchers
… public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, … it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome … is already the most comprehensive BGC database available at 10X the scale of the closest comparable database, and has …
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JGI Scientists Pen Genome Watch Articles
… debut writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at … the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the … Toit said. Being offered the chance to write for a world-class journal was triggered by a talk. Woyke was invited to …
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You Can Move, But You Can’t Hide
… and accurately identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements … cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s … the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the …
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