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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a collaboration involving more than 200 … of the microbial communities in the environmental samples without needing to isolate individual organisms, using …
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Matt Blow
… In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the … and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to … Who can apply for this proposal call? A(nswer): We work with people from all around the world. We work with … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Cultivating Symbiotic Antarctic Microbes
… of soil-sediment environments, water and air-atmosphere with the humans and the biosphere), including the global … ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental … microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of …
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Scaling Up Existing Skill Sets
… Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship … Doing the JGI internship has given me a great experience working intermediately between academia and industry, which is something I didn’t even know existed before. …
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A Plant Root Atlas for Tracking Developmental Trajectories
… 100,000 single root cells and combining the information with previously published datasets. The work was  recently published in the journal  Developmental … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Pinning Down a Piece of Photosynthesis
… and water into oxygen and sugars. How photosynthesis works, though, is much harder to pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: surprising dependencies, … an array of experiments at universities and national user facilities, researchers found that this protein detects …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, … of microbes through forest canopies.  The Impact This work, enabled in part by the U.S. Department of Energy (DOE) … land and the atmosphere. Microbes living there can interact with chemical defenses of plants and influence nutrient …
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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise …
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Hiroshi Otani
… particularly actinomycetes. His research activity is focused on developing and implementing new technologies and … Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, … New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … in plant roots),  M. elongata  doesn’t have as many gene products that directly influence plant phenotype, such as …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… and the Molecular Foundry (TMF) for their collaborative user program. The portfolio of research proposals integrates genomics with nanoscale science, all aimed at accelerating … environment. Users and members of their research teams work onsite at TMF alongside facility experts to conduct …
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