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Jeremy Schmutz
… with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome … 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and … relevant cellulosic feedstocks. Schmutz provides scientific project management for the reference eukaryotic genomes …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… messenger RNA sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the … or through the  “Facilities Integrating Collaborations for User Science” (FICUS) initiative .  Q: What is the … of the proposals. Upon approval from JGI reviewers, the DOE project managers review the proposals. The proposer of …
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JGI-KBase Panel at SACNAS
… through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get … program managers, and intern alumni will introduce projects designed for students to gain research experience …
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Rex Malmstrom
… a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … also carries out custom preparative work for difficult user projects, including those that require fluorescence … reactions, increase throughput, and enable processing of samples that would not be possible with traditional …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … with the proper permits, to the refuge to collect soil samples from multiple locations. Back in the classroom, JGI …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … some experience with OpenACC or CUDA – links to training materials will be sent out. The main benefit is professional …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … genomes (MAGs) reconstructed from sequenced environmental samples in a previous study. The team analyzed over 80,000 …
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Better Genome Editing for Bioenergy
… at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing microbial … genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be …
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Dan Rokhsar
After successful completion of the human genome project, Professor Dr. Rokhsar ’s team has continued to … group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has … biofuel production. … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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The Busy World of Deep Sea Eruptions
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