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… the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences … JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best … went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing …

… producers fueling our planet’s biogeochemical cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …

… Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well …

… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial … processes for producing industrial chemicals, specialty materials and high-value bioproducts. This study offers a … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of how …

… the southern California and Mexican coastlines. Roughly 100,000 years later, that Japanese eelgrass crossed the … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … a US Department of Energy Office of Science User Facility, is supported by the Office of Science of the …

… (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin … For example, lignin could be used for building materials such as cement or adhesives. Described as the “DOE … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …

… rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 …

… That’s why each year we look for novel research projects — aligned with DOE missions and from PIs who have …  resources, these researchers will dive into a range of projects spanning the resilience of desert grasslands to the … for this annual call; the next deadline for proposal submission is October 4, 2024, for inclusion in the December …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (Berkeley Lab). Using 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have … three domains of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down …

… analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but … “regular” PacBio, since the low-input protocol involves PCR amplification of the library. 6mA and 4mC (~50x depth), 5mC …

… relative of SOD is P. infestans , responsible for the mid-19th century Irish potato famine.   Shortly before the … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, … lab in Mulford Hall. There, they conducted DNA analyses of samples collected on recent SOD Blitz expeditions. The team …

… Using metagenomes recovered directly from environmental samples and cultivated microbes, researchers have been able … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that …