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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … picture of a virus, and for viruses that have integrated into the host genome, these sequences may be tainted by the … & Microbiomes (IMG/M) suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. …
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Igor Grigoriev
… and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous … Physics Institute, Moscow, Russia PhD in Molecular Biology, Research Institute for Genetics and Selection of Industrial … Varga et al (2019) Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecol Evol . …
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Pinning Down a Piece of Photosynthesis
… the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in … at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — the … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a … hearts, we’re featuring some scintillating genomic science research that feels especially relevant to living on a … his project, and riffed a bit on what it means in a more global context. As we approach Earth Day, I thought you …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… Meeting.  A wide array of invited speakers shared how research infrastructure – DNA sequencing, synthesis, … more interested in microbes with the potential to impact global climate change, he said. “To understand the … back in January of 2020. His work has also yielded insights into the origin and spread of viruses like dengue, Ebola, …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the … Additionally, 40 percent of the proposals were submitted by researchers who had not been a primary investigator on any … with key DOE Office of Biological and Environmental Research (BER) initiatives in bioenergy crop improvement and …
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Making a Lichen Together
… mycobiont. However, despite a century-and-a-half of lichen research, many of the symbiosis’ details remain unclear. For … molecular mechanisms can help researchers better model global carbon and nitrogen cycling. Summary To shed light on … has opened the door for more incisive investigations into how lichens function. One of their abilities that’s  …
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JGI@25: Using Team Science to Build Communities Around Data
… Martin of the French National Institute for Agricultural Research (INRAE) focused on in-depth exploration of … in gene function across the phylogeny — and link these into our DOE crop plants, so we can learn from evolution …
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Dan Rokhsar
… a Professor of Genetics, Genomics and Development after his research interests shifted from condensed matter physics to … biology, genomics and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, … Cornell University, NY Postdoctoral scientist, IBM Watson Research Center, Yorktown Heights, NY …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look … and cotton D genomes. A multi-institutional team including researchers at the U.S. Department of Energy (DOE) Joint … was to try to bring in molecular methods of breeding into cotton,” said Schmutz, who heads JGI’s Plant Program. …
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Leo Baumgart
… DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … bioinformatics pipelines to transition bench-scale methods into production workflows. He developed and scaled the … Ramani Kothadia, Mario Melara, Elais Player-Jackson et al. "Supporting FAIR Scientific Workflows with the JGI Analysis …
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A Natural Mechanism Can Turbocharge Viral Evolution
… these viruses to target new microbial prey. The Impact This research provides a much more comprehensive understanding of … Scientists might then harness them as molecular tools for research and industry applications. Summary In their … opportunity to study how DGRs work and develop more of them into new biological tools. …
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