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… RNA-Seq assembly. RNA-Seq is a technique for profiling the small fraction of a genome that contains transcribed … whose research interests and experiences overlap significantly with the goals of the program could be considered.” … of chemotaxis in the Arabidopsis microbiome, particularly, how bacteria can be driven toward compounds produced by the …

… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … for the absence of all the other letters of the alphabet. Yet the specific sequence of these four letters … (Berkeley Lab). And one of the tools that researchers can apply to study the transcription factors that control …

… challenges. And many JGIers work to connect those big goals with their everyday activities, striving for … new initiatives like this. “So when we have a new idea, we can come to them and say, ‘you know, we want to try this. We … experience, Ciobanu said. “If you want to learn both how to propagate and how to grow plants that are sustainable …

… A preview of how large-scale single cell genomics complements … sample. Their work showed that single cell genomics can add significant value to the other commonly used … (~190°F), yet microbes thrive here. The communities in this extreme environment are often less diverse than those within …

… the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and … internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial … are generous with their time and like nerding out about the big stuff, well, the little stuff! People hold office hours …

… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome … JGI advisory committees, we welcome and encourage openness, candor, transparency, and creativity framed by a positive, … constructive and professional mindset, so that together we can foster a respectful, collaborative environment free of …

… its enhanced neural network architecture, GenomeOcean has shown improved computational efficiency of its modeling in … across various terrains, and microbial life adapted to extreme conditions studied through the Antarctic Lake … 4 billion parameters is not a task that can be handled by a small computer cluster. GenomeOcean was trained on a …

… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … Over the years several secondary metabolites databases have been made available to the research community, each offering … (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past experience in developing …

… Uncovering associations between plant roots and fungi that can help or harm plant … Institute for Plant Breeding Research (MPIPZ) studied how fungi associate with roots in A. thaliana plants. The … the European Regional Development Fund, and the Plant–Microbe Interfaces Scientific Focus Area in the Genomic Science …

… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining … the Joint Genome Institute, Dr. Cole’s research focus has been on understanding how microbes can colonize plant roots, focusing on genetic components … Selected Publications …