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Fungal Friends or Foes in Plant Roots
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of … tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are incorrect or need to be changed, please … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace … the big stuff, well, the little stuff! People hold office hours and you can pop in and ask them questions about all … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. …
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Picking Up Threads of Cotton Genomics
… underscores its value and importance in the fabric of our lives. In the United States, cotton production centers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … added. “We must be careful who we ask to take on these projects due to their difficulty and complexity, but we have …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations … prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, … working to address some of the most pressing challenges of our time. For more information, please visit  …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale … separating urine from other waste streams and recovering resources that could be used for products such as agricultural …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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Effects of Polar Light Cycle on Microbial Food Web
… dominates these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles … offers new insight into the primary producers fueling our planet’s biogeochemical cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … and multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the …
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Plant Microbial Interactions Group
… 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: Katsuma Yonehara (Tokyo University) …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … superphylum of extremophilic archaea first outlined by JGI scientists and their collaborators in 2013. While most … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … to create pipelines, tools and other standardized data resources that the global research community can access and use … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome …
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