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Systems Metabolic Engineering of Escherichia coli Improves Coconversion of Lignocellulose‐Derived Sugars
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Adaptive laboratory evolution for improved tolerance of isobutyl acetate in Escherichia coli
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High-density CRISPRi screens reveal diverse routes to improved acclimation in cyanobacteria.
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Doubling Down on Known Protein Families
… beam — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … But what kind of diversity might those ‘unknown unknowns’ hold?  The team started with 8 billion metagenome genes from …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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JGI on the 2021 Highly Cited Researchers List
… team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. … found that anaerobic fungi from herbivore poop might be a new source of novel compounds to help bolster the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … and  B. hybridum are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… where it was found. The study was featured on the  New York Times 2022 List of Firsts as well as other year-end … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … to an update of  the JGI’s Genome OnLine Database (GOLD ) database that also marked the platform’s 25th …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … visualization through a sustainable, state-of-the-art data portal, which will include a database for comparative …
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User Executive Committee Charter
… including areas where more or less capacity is needed, new capabilities desired, or capabilities that could be …
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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed …
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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