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A survey of computational approaches for characterizing microbial interactions in microbial mats
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DAS Tool for Genome Reconstruction from Metagenomes
… approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity … genomes, particularly from incredibly complex soil microbial communities, is crucial to understanding how these … improving methods for isolating and characterizing entire microbial genomes from sequences generated from …
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Partners
… others providing complementary expertise to advance the science and serve as impact multipliers . The JGI has a … Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and … through the Facilities Integrating Collaborations for User Science (FICUS) program.     …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The …
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The microbial ecology of permafrost
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Microbial Diversity for Biotechnology
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Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced … Brandon Imstepf一were selected to continue their research projects through the DOE RENEW grant initiative when school …
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A One-Stop Shop for Analyzing Algal Genomes
… to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … from IMG/VR , a database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as …
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2025 NeLLi Symposium
… discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous … lineages in biogeochemical cycles and beyond, as well as microbial symbioses. We aim to foster discussions centered … to capture, define, quantify, and functionally characterize microbial diversity. The Symposium will also focus on …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… bacteria function and colonize diverse environments. The Science Cyclic di-GMP (Guanine Monophosphate) is found in … functions. It plays an important role in regulating microbial cellulose production and biofilm formation, which … Science Program (CSP) . The Impact Cyclic di-GMP controls microbial colonization, which can affect pathogenic and …
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