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Virus Discoveries that Keep Getting Bigger
… then co-culturing isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used culture-independent … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … approach for giant virus genomic discovery.  In 2020, a JGI-led team used this approach to deliver novel viral …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … Berkeley National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the … Podar of Oak Ridge National Laboratory, who spoke at the 2019 New Lineages of Life (NeLLi) Meeting organized by the …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … Hot Springs is a highly-reduced, suboxic system that may be analogous to environments found on early Earth.”  …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … of these viruses and associate them with their microbial hosts. However, assembling viral genomes from metagenomes is … that have integrated into the host genome, these sequences may be tainted by the presence of non-viral genes. Up to …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI project, and the Functional Genomics call is for …
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