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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … a Superfund site. The chemical PCE (perchloroethylene) found its way into the groundwater of several communities in … from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Simon Roux
… interdisciplinary research focused around developing foundational knowledge of viral diversity and virus-host … prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. … Nature Microbiology 4, 1895–1906. Schulz et al., 2020. Giant virus diversity and host interactions through global …
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JGI announces second round of 2023 New Investigator awardees
… [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin Hammer, Christina Hazard, Rachel Mackelprang, Brook Moyers, Mei, Ran,; [below] Benjamin Peterson, Dacheng Ren, Allison Rober, Neal Scott, Chikae …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play key roles in … not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some plants and …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 … of this novel diversity represents an ongoing challenge. This symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … purification and sequencing steps. Ultimately, researchers found their updated strategy required one-sixth the labor of …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … Computing Group, which is supported by the National Science Foundation (awards ACI-1532235 and ACI-1532236), the …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … such as sphagnum’s associations with methane oxidizing bacteria, nutrient uptake, and its productivity and … through an approved CSP proposal. The researchers found that these species encode a sulfate reduction pathway, …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …
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