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Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … and the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded the … and are exploring improvements to switchgrass through more targeted genome editing techniques. A 2020 Nature …
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Picking Up Threads of Cotton Genomics
… including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … some of the most pressing challenges of our time. For more information, please visit  …
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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Seven genome sequences of bacterial, environmental isolates from Pony Lake, Antarctica.
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Eight genome sequences of bacterial, environmental isolates from Canada Glacier, Antarctica
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Marine Microbe Contains Multitudes
… understanding of carbon fluxes in the environment. Moreover, the deep ocean is the largest inorganic reservoir … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … plants but not the ammonium. These results highlight differences in plants’ response to nitrate …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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An Automated Tool for Assessing Virus Data Quality
… in sequencing technologies and computational approaches, more and more virus sequences are being recovered and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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