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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … agricultural soils, human- and animal-host associated, and ocean and other aquatic environments – that’s pretty … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … we also worked in DIANs. We worked on that. We had separate projects with John Thorson and Ben Shen. [Listen here to Ben … cave project just now switching from intermicrobial interactions, studying intermicrobial interactions by imaging …
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Science Programs
… their expertise to enhance the scientific impact of user projects, develop cutting-edge approaches for and with users, and create … Their concerted efforts help maximize the JGI’s impact in advancing both user science and the DOE science mission. …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE technologies. … a lab environment, shining a light into this “biological dark matter.”  It also offers CRISPR a point of entry. By … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria … This work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Waiting to Respire
… development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria did; contemporaries Melainabacteria and Sericytochromatia, members of the same clade … working with researchers from the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We … advanced genomic capabilities. This year we brought online the latest short-read technology, the Illumina NovaSeq X …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and … BS in Electrical Engineering, University of New South Wales, …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … stable over long evolutionary times. But, there’s a lot of action happening in terms of where those binding sites are … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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JGI on the 2021 Highly Cited Researchers List
… among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … field data with a reference switchgrass genome to associate climate adaptations with switchgrass biology. The …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to … inner workings of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. Department of Energy Joint …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … and also made new friends while working on their summer projects. Watch the short video here to see what they had to … distachyon root transporters in plant-microbiome interactions ” Cory-James Pugne-Andenoro : “The best part of the …
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