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Dispatches From JGI Interns
… deep dives into genomics, computational tools, and big data.  …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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Rex Malmstrom
… symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative analysis strategy for …
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … program. Q: For a NEON Assignable Assets project, does the data produced become public as well? A:  Currently NEON doesn’t have a method for hosting that data. NEON recommends you host your data elsewhere. However, …
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How to Submit Sequencing Samples
GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected via spreadsheet or directly via a web … See our Taxonomy Quick Guide. PM sends PI the sample metadata spreadsheet to fill out (or provides a link to complete …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells … in addition to associated plant genes.  All together, these data offer a granular view of both plant and fungal activity …
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Natural Prodcast Episode 16: Marcy Balunas
… massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … figuring out how to filter out noise from the metabolomics data. We’ve done a lot of work learning about how to use … strain to look at.  And then figuring out how to show this data and to do it in a way that makes sense. And I always …
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Tanja Woyke
Eberhard Karls University of Tübingen, Germany … 2018-2023 Highly Cited Researcher, Biology and Biochemistry, top … J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … the research question and applied it to such a large data set, but also went all the way through to convert her … to learning about how to navigate and analyze large genomic datasets during the internship, Wint also began learning …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and genetic information has allowed the research team … biomass-based fuels.   … P. virgatum on Phytozome … Plant Dataset …
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CSP Functional Genomics
… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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