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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have … sorghum’s potential to adapt and thrive in our changing climate has earned it a place on the JGI’s Flagship Plant … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even lighter threads in the mix. But in the Petri dish, the thin vermicelli-like threads floating … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some plants and fungi have mutually … The sequencing project was funded by the U.S. Department of Energy …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , researchers … The work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … data (MAGI) for functional annotation and identifying unknown compounds (Pactolus). … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … users can leverage to create a more complete picture of how microbes control useful chemistry in other organisms.  … clusters themselves. The team also identified previously unknown promoter sequences within these gene clusters, …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … the planet’s microbial diversity, much of which remains unknown and uncultured in laboratories. Other firsts … green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the University of … surveys could lead to better predictive models of global climate. They may also provide a basic understanding of the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome … of other polyploid plants have gone extinct or are unknown),” noted Pilar Catalan of the Universidad de …
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