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I-Min (Amy) Chen
IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, taxonomic, and … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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SPRUCE-ing Up Science
… fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … Lab), have taken stock of the current state of microbial genomic biodiversity. Using publicly available genome … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data … and then you are extracting links between the genetic variation and phenotypic performance,” he said. Both …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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An Automated Tool for Assessing Virus Data Quality
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting, to be held in …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … close to our JGI hearts, we’re featuring some scintillating genomic science research that feels especially relevant to … born, of about 2 billion people on the planet, to you know, within my lifetime, we should hit around nine or 10, which …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Training the Next Generation of Talent
… in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program. … UC Merced has many talented graduate students working in genomics and neighboring areas, areas the JGI is interested in. JGI would like to tap into that talent pool. At the same time, this program expands and enriches …
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