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How Maize Makes An Antibiotic Cocktail
… revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of … of techniques. They screened panels of hundreds of maize lines for genetic variation in the ability make zealexins, … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain … positions  – University of Florida; University of California, Los Angeles … et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for …
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JGI@25: Studying Sorghum’s Survival Skills
… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – … of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist … and education communities access and build on the JGI’s resources. The UEC represents the JGI user community and is …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … stored with them. GOLD provides manually curated metadata resources for organisms and environmental samples. The … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … from moss sex chromosomes can be applied to improve crop breeding. For example, Schmutz noted, specific genes of …
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How Filamentous Fungi Sense Food
… Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into … culmination of nearly a decade of work to develop genomic resources for drought tolerance in perennial grasses. The …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … the trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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2025 Progress Report
… demonstrate how their laboratory and data science efforts support users, advance foundational science and enable … Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … the community through responsibly managing our people and resources.   Director's Perspective     …
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Soil virus offers insight into maintaining microorganisms
… to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and annotation of all publicly available genomes in three domains of life.  Using the IMG suite, JGI retrieved …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … will be important for alternative fuel development in the future. Summary Though the closely-related Eucalyptus and …
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