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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, 2017 issue of … This research was supported by the National Science Foundation and the National Institutes of …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     … of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning … ecological niches from genomic features alone. In one major project analyzing over 1,000 yeast genomes, machine learning …
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Leo Baumgart
… San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic … which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the … researcher who serves as their mentor. By contributing to projects that will help them build skills and tools, they … results not being the most promising. Going into the project, like, I kind of knew that my projects were …
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for forest … DOE Office of Science National User Facilities in a single project. …
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JGI at the AGU Fall Meeting
… Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … from the warm, well-lit surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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First Monoploid Reference Sequence of Sugarcane
… Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they … The JGI sequenced half of the 4,500 BACs sequenced for this project that were colinear to the gene-rich part of sorghum …
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Mining Metagenomes for Cas Proteins
… to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) has applications across many areas. In particular, gene editing is being … The work conducted by the US Department of Energy Joint Genome … the Office of Science of the US Department of Energy under contract no. DE-AC02-05CH11231. The work was supported in …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins …
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