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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The software was created … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted … one JGI mentor. Together, they work through a specific project that aligns with each intern’s interests or … in some cases daily, check-ins with their mentors to ensure projects progressed despite the challenges of remote work. …
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Gotta Catch 'Em Gall
… In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … The work conducted by the U.S. Department of Energy Joint Genome …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint … the 8X variant come from? Did they arise multiple times or does their broad distribution indicate multiple, independent …
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Dan Rokhsar
… JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, … After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to …
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2024 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We …
Learn more
JGI Workshops at PAG
… The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … way from sequencing to functional characterization, and a project like this — an exciting project — we were able to extend our capabilities, … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Simon Roux
… research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … same mistakes,” he said. “Although in my specific case the projects are different for the two proposals, I can see the …
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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