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An Integrated Dataset to Understand Ecosystem Interaction
… dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern … remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The … cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its influence … when the fungus is present. The Impact Black cottonwood, or poplar, ( Populus trichocarpa ) is the fastest growing …
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What Happens To a Rainforest When You Dial Up Drought?
… happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, …
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Protocols
Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Special Initiatives & Programs
… refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist must be …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers … some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … there, they just are going to be there in different percentages of relative abundance. But again, going back to … that’s Q-U-A-V-E E-T-H-N-O-B-O-T, also on Instagram at the same handle. The book will be out on October …
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Partnerships: Adopt-A-Genome
… some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …
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Webinars on Offerings & Capabilities
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Natural Prodcast Episode 16: Marcy Balunas
That is one of the really big frontiers for the next stage of natural product drug discovery I think. Or even … computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product diversity and …
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