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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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CSP Large Scale Call
All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data … the applicant/community, and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … Xenorhabdus japonica DSM16522 R Robertson, et. al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 … subsp. calidus DSM 22629T. M Snook, et. al.  2024 . Microbiology Resource Announcements, e00527-24 Draft genome …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language … carefully to ensure that your request is appropriate for that call. Learn more about the  average base outputs …
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New Lineages of Life Group
… in the era of genome-resolved metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) … The endosymbiotic box of protective tricks. Nature Reviews Microbiology 20 (5), 255-255 Schulz et al. (2020) Giant … The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the Group Lead …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For … DPANN superphylum of Archaea. This pair is abundant in two subsurface ecosystems in very different parts of the world: …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … we recorded in my hotel room at SIMB, or the Society for Industrial Microbiology conference that took place in January this year …
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Viral Genomics Group
… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … — how big (or small) can tailed phages be?  Nature Reviews Microbiology.   19 , 407 Berg, M. et al. (2021) Host … in bacteria and archaea across Earth’s biomes. Nature Microbiology. 4 , 1895–1906 Roux, S. et al. (2019) Minimum …
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Natural Prodcast Episode 2: The Primer, Part 2
… so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … metabolites, like sponges were a really common source for people to try to find new medicines for a long time. But … this is probably one of the most famous photographs in microbiology.    ALISON: Oh my gosh DAN: Do you recognize …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … tweaks, I think we’ll be on a pretty regular schedule for a while. Moving forward, I’m hoping to get a new one out … is another one we recorded at the Society for Industrial Microbiology Natural Products conference that was held last …
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Active anaerobic methane oxidation and sulfur disproportionation in the deep terrestrial subsurface
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Metagenome Program
… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … linked to custom interfaces and visualization tools for user analysis. Additionally, the Program works to link … Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of microbial and …
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