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Developed in 2017, the PDT was established in part to help … community at large with access to high-throughput sequencing and other resources at the JGI for projects of … genome engineering (CRAGE), which offers single-step genomic integration and prototyping of complex …

We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …

… required documentation here .  … You can request a JGI Single Sign On account at https://signon.jgi.doe.gov . This … manager may then schedule and allocate resources for DNA sequencing. … No. However, the JGI does maintain a list of … ) Metagenomes and Single Cells: IMG/M   (citation: …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  … to the 2-year use-restriction policy as described here. No single project has data under both use-restriction and …

To expand access to integrated data, improve tools and infrastructure as well as … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …

… that – I want to say like lipid bilayer, you know, in the cell.  DAN: It depends on lifestyle. So there are lots of … is similar to primary metabolism. So if you were, you know, sequencing an organism for the first time, and you’ve never … think of bacteria. You think of bacteria as sort of these single celled organisms, kind of all over. But these kinds …

… is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional … and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …

… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … high-quality de novo assemblies for very large-scale single genomes, based on the JGI assembly tool meraculous. …

… be successful. Right? Because we don’t – drugs are usually single molecules, they are not extracts. And so yeah, in … and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – sequences … in ourselves and every living thing that we know of with cells, and so… So you can think of DNA as maybe being …

… quantities of DNA derived from individual environmental cells. The proof of principle study built off earlier … and finished genome derived from an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. …