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Microbial Program
… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … of the microbial product catalog : Beyond minimal draft and improved draft microbial genomes the program offers … distribution. These are derived from isolates and single cells. This effort uncovers novel genes, protein families, …
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FICUS
… call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE … focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an accelerated timeline … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … the pieces that attached to the other pieces, and sort of building out the puzzle from there to find that vein of …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Plant-Microbial Interactions Group
… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … We are using these methods to understand how plant cells respond to low nutrient conditions (low nitrogen or … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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DNA Synthesis Program
… a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the … collaboration with U.S. and international scientists to drive innovations that align with DOE's missions. … The … synthesis capabilities accelerate progress in the Design-Build-Test-Learn cycle, helping researchers optimize genetic …
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Products
… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … finished product depend on genome. Selected genomes will be improved based on feasibility and scientific merit Assembly, … microbial aggregate, or a specific subset of free-living cells. Extracted DNA may be amplified using whole-genome …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … metabolites. And they often use primary metabolites as building blocks to produce novel molecules. And so we’ve got … like, you know, like an organism. They have specialized cells and the ecology there is really fascinating, probably …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … of secondary metabolism. Hey there, and welcome back to Natural Prodcast, and this will be episode 11. This … is done through also a process where you say, OK, I want to build this feature, then you– well, Simon is currently …
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Natural Prodcast Episode 18: A CSP Primer
If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, … student, if you don’t have a track record yet, you need to build a team around this project, right? So you need to have … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Fungal & Algal Program
Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … the biological mechanisms that enable fungi and algae to play a vital role in carbon cycling, biodegradation and … genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and integrate multi-omics …
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Frequently Asked Questions: Project Management
… https://signon.jgi.doe.gov . This account can then be used to submit proposals, sample and project metadata, and to … ) Metagenomes and Single Cells: IMG/M   (citation: … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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