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Natural Prodcast Episode 7: Ben Shen
BEN: You know, to say, man-made compounds. How can you design a drug, right? You design drugs  based on certain knowledge, without which, you know… If you … active compounds. And we talked about how natural product based or organism extracts are not being used very much …
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FICUS Overview
… provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … families of genes that it searches for and uses a rule-based system that classifies the things that it finds into … genome mining over the years, and we talk about a new publication out of JGI in Nature Biotechnology , for which …
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Single Cell Research Group
… an era of ‘homology creep’, function prediction as purely based on annotation may not be sufficient. A more recent … . Here, single cells are characterized and selected as based on a specific functional trait or phenotype of … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Metabolomics
… advanced liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational …
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Secondary Metabolites Program
… roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The program … pathway analysis, optimization of cell- and cell free-based expression platforms, tools and data for deciphering … the program strives to facilitate the discovery of new bio-based molecules that can drive innovations in bioenergy, …
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Natural Prodcast Episode 16: Marcy Balunas
… of the international cooperative biodiversity group (ICBG) based in Panama and was dual there and at Scripps where I … could say the gut is, kind of. But not the same way this is designed specifically to house symbiotic bacteria. And so … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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Institutional User Agreements
… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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JGI Advisory Committees Code of Conduct
… and civility in all discussions and debate; Make decisions based on merit of issues; Act honestly, transparently, and … for diverse ideas and a commitment to free inquiry based on evidence and criticism; Respect the confidentiality …
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Computationally Classifying Fungal Lifestyles
… between fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, … classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle based on 6 gene clusters showed a >95 % accuracy in …
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Mission
The JGI provides integrated high-throughput sequencing, DNA design and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to these challenges.     Our … interactions, or on development of improved sequencing-based technologies are also welcomed but the applicant …
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New Lineages of Life Group
… and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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