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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall Loxahatchee National … armed with the proper permits, to the refuge to collect soil samples from multiple locations. Back in the classroom, …
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Natural Prodcast Episode 18: A CSP Primer
… the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … For example, people do experiments where they involve a population in the lab under a certain stress or conditions, … We don’t want to get a proposal that’s just asking for 20 microbial genomes. That is not a good fit for our annual CSP …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and … seen in the past with people that have done metagenomic studies on, say, the human gut or whatever. But other than … that are no longer needed would end up being purged from populations. And that would go for chemistries as well. DAN …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science … return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By … model and track the forest recovery process.  Summary Most studies on post-wildfire soil microbiomes have focused on …
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Natural Prodcast Episode 15: Katherine Duncan
… once you’ve isolated them, you would have to do in situ studies in Antarctica. So I guess we’ll never know if we’ve … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … of new chemistry, and we want to understand the antimicrobial-resistant era, we need new chemistry. If we want …
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Natural Prodcast Episode 16: Marcy Balunas
… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  MARCY: Yes. So I would … of these. And so Spencer and his group have done the microbial profiling for what’s in there. It’s a fairly well …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually … were not enantio or diastereomeric pure. And so there were studies that were done previously with SVR. But because …
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Metabolomics
… they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Microbiome Data Science Team
A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. … uncovers gaps in amplicon-based detection of microbial diversity.  Nature Microbiol .  15032 Eloe-Fadrosh …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science … cycling takes place only on a microbial level. Previous studies focused on the Southern Ocean have found that in …
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JGI Portals
… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … provides tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the …
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How to Target a Microbial Needle within a Community Haystack
… tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently … strides in generating genome sequences for members of the microbial world through bulk community sequencing … of ways including gathering a more complete view of a population’s genetic makeup and identifying viruses …
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