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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science … Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science … a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … genes with functions useful for forest recovery, this study sheds light on how microbes contribute as a forest …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide … genomic capabilities, large-scale AI-ready data and professional expertise to support the global research community in … and nutrient cycling to enhance crop resilience, improve soil health, and make more efficient use of marginal lands …
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Prokaryote Program User Advisory Committee
… The Prokaryote Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Gary Trubl, a virologist at Lawrence Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to see what they’re doing, he first needs …
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Programs & Platform Leads
… providing genome science capabilities to support BER's mission of achieving a predictive understanding of complex … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … of them to be highly related to enzymes that we have been studying since day one in my lab that do oxidative … not in the form of a heme. DAN UDWARY: A heme– [INTERPOSING VOICES] ALISON NARAYAN: So you don’t have a porphyrin around …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … The work conducted by the US Department of Energy Joint Genome …
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses that may promote soil health. The work was … The Impact The specific protein described in  a recent study in  Nature Communications , a chitosanase, is tied to …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate … PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working … launching the user’s project. See below for details on each step. …
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Natural Prodcast Episode 2: The Primer, Part 2
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … secrete a lot more things than people do…? Although I don’t study people so maybe I’m wrong. But yeah, I mean, because I … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …
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Partnerships: Adopt-A-Genome
… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … in microbial genomics, metagenomics, and computational biology, and to empower them with the knowledge and …
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