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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic … myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …
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FICUS
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides … the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and thematic scope of …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March … took effect in six San Francisco Bay Area counties. The JGI, located at Lawrence Berkeley National Laboratory, is … been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on …
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Natural Prodcast Episode 2: The Primer, Part 2
… a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … metabolism pathways now, but there’s still almost certainly unusual things that we don’t recognize, because the only way … have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … the responsibility for leading the efforts to do so, and JGI expects acknowledgment (see Auspice Statement below) for …
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Natural Prodcast Episode 5: Brad Moore
… first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I … had experienced the largest bloom ever observed on planet Earth. This was the 2015 Pseudonichia diatom bloom. It made … that Merck has, that was published in Science just a few months ago, where Merck scientists and Codexis scientists …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … all of these programs can and often do involve secondary metabolism. JGI’s mission is broadly focused on biological …
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Natural Prodcast Episode 11: Marnix Medema
… products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural Prodcast, … our bedroom together with us still while she’s still four months old. So it’s not a bad location for a little baby. … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …
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Natural Prodcast Episode 15: Katherine Duncan
… until I was back at University, so it must be about a month, a month and a half later. In September, I went to a … of paints the picture of– a lot of us say, well, we go to unusual places because biodiversity translates to Nobel … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be …
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Natural Prodcast Episode 1: The Primer, Part 1
… a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … purposeful so it’s some kind of – Is it a compound that helps them from drying out? Or… What is it? DAN:  Yeah I …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … completion of work on all approved proposals within 36 months from the approved start date. Additional time …
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