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… contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun … these projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome Plant and Algal Resequencing SNP and short indel calls, …

… No. However, the JGI does maintain a list of protocols, found in … Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: … How do I submit a proposal requesting sequencing, … How do I obtain a JGI login? … I have new contact information. How can I update my JGI account? …

… fun conversation with Roger about all this, in terms of how to build an international community collaboration, and … it relates to structure elucidation and genome mining, and how we might start to better connect those two things, … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… is also twofold but for different reasons to learn about how nature builds molecules because nature does this with … ask questions about what don’t we know about this molecule. How do we discover more about what it can do, and as … them to making a compound, do you also take into account how are they going to behave in certain solvents or certain …

… Science Program, to use microbiome science to help make plants more resilient to drought. …

… biosynthetic pathway, and I’ll have to do a whole show on it one of these days. If you listen to the Nancy Keller interview , I think you’ll have heard how a lot of us who work in fungal natural products, … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… one of my favorite interviews so far – you’re going to hear how passionate and enthusiastic Ben is about our field, and … to naturalprodcast.com, where you’ll find transcripts and show notes for every episode we put out. I actually put a lot … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in …

… part 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … and, sort of, understanding – like we’ve talked about – how bacteria or other organisms communicate and how and why …

… about today and it will be really good to maybe start with how did you get into this field? How did you get into natural products? Marnix Medema: Well, … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …