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Natural Prodcast Episode 15: Katherine Duncan
… of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And … what’s important in terms of the chemistry produced by microbes. And by what’s important, I mean, like, where … chemicals they produce, their ability to evolve, to go with horizontal gene transfer and run with it and produce …
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Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility … such efforts should specify the collaborative nature of the project, and authorship is expected to include all those … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …
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Natural Prodcast Episode 11: Marnix Medema
… the professor was actually quite enthusiastic about the project and he arranged funding to do it nonetheless from … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the … a nice example of going from a whole community with many microbes, hundreds of gene clusters, and then being able to …
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Natural Prodcast Episode 24: Jackie Winter and SMC
UDWARY: OK. One of the– I don’t know. Maybe we ask you the boilerplate questions that I try to tend to ask to most … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are … of Utah , about her secondary metabolism research on novel microbes and bioactive compounds in the Great Salt Lake. …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … biology, the program enables the design and synthesis of complex genetic pathways and biosystems. It The program …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil spill led to a draft genome of the first …
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User Support
The JGI Project Management Office carries out a number of activities … collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities … using your JGI login. After sequencing/metabolomics has completed, your Project Manager will initiate analysis with …
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Natural Prodcast Episode 10: A Primer on Genome Mining
And so when I came into graduate school, I worked on that project. And it was working exactly that same kind of way, … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and … metabolism because a lot of secondary metabolism is horizontally transferred. Things shift between even …
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Natural Prodcast Episode 6: Marc Chevrette
… among lots of other things, he works on the Tiny Earth project, which you’ll hear him describe. [ Go here to learn … was looking to develop new methods for DNA sequencing of microbes. And what kept breaking our methods was these damn … for antibiotics and the microbes that make them is in the soil. There’s … uh… there’s an issue there though, in that …
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Secondary Metabolites Program
… growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … metabolic similarity & compatibility, and signatures of horizontal gene transfer. … The SMC provides complete … Prodcast … Secondary Metabolites Program in Detail … Projects and Initiatives … Secondary Metabolites Program …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … The signing official must have the legal authority to commit your institution or organization to the terms and … indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication requirements. …
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