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… microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell … amplification at a large scale. Summary The two most common methods for collecting genomes from microorganisms are …

… preferences A 10″ Simple Rules” article on increasing computational skills among biologists JGI CSP Proposal: …

… of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data … of Uncultivated Viral Genomes, derived from genomes, metagenomes, and metatranscriptomes, with over 15 million …

… navigate to the proposal info page using any of the below methods: Search the Genome Portal Navigate to the JGI Genome …

… antiSMASH has been sort of a good aggregator of different methods that people use when they’re doing homology … set of MAGs to date. Here, at JGI, we took more than 10,000 metagenomes, many of which were sequenced at JGI, and some … TAKEMURA: –just give me a few examples of where these metagenomes came from? DAN UDWARY: Oh, yeah. These things …

Machine learning methods were applied on sequenced fungal genomes to classify …

… the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence … to us. It could be a metagenome. We’re going to run metagenomes. That’s going to take a while. [CHUCKLES] But … like massive brownouts in California when you’re doing the computational analysis of metagenomes. DAN UDWARY: Well, the …

Metabolite annotation based on chemical standards or computational approaches. Relative abundance of identified … Metabolite annotation based on chemical standards or computational approaches. Relative abundance of identified … High quality draft assembly of long-read sequence data, computationally analyzed and improved.  Semi-manual. …

The Department of Energy's Computational Science Graduate Fellowship (DOE CSGF) program … worked with DOE JGI's Sam Deutsch. Learn more about the DOE Computational Science Graduate Fellowship Program at …

Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. … the user to analyze these data with existing bioinformatic methods to bridge the gap from sequence to biology. …

… on a team at the Broad that was looking to develop new methods for DNA sequencing of microbes. And what kept … For sure.  MARC: We were basically, Dan and I and one other computational biologist were tasked with looking at, you … what that – what that means. I think it means I was the computational guy that wasn’t scared of putting gloves on. …