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…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … variety of experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …

… and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to … implementation of prokaryotic systematics across cultured microbes and recovered population genomes using Average … hard to sequence and assemble samples, such as those from soil and plants, our group researches the use and …

… Microbes drive critical ecosystem functions and affect … measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question in natural soil ecosystems by combining metagenomics with other omics … towards specific phages and/or hosts. To that end, the JGI Viral Genomics group is exploring different approaches …

… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … microorganisms that may be of interest to you and folks at JGI. These organisms we’re finding– at least by looking at … to a molecule that’s actually helping people and being beneficial in terms of medicine. And that’s something we …

… we talk about my favorite topic in, arguably, my area of expertise, which is genome mining. You’ll hear us talk about … to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and …

… The JGI is leveraging its current partnerships to offer new … Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein Data Bank … with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure …

… we really recognize, right?  ALISON: And I tend to think of microbes as being able to secrete a lot more things than … have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …

… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … was adjacent to what I worked on, but my experience of how microbes are interacting in the environment like, like my … is a chemical compound called geosmin that’s produced by soil bacteria that live all over the place. So that smell of …

… of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … of the journal in which the research is published. The JGI expects that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce …

… activity. So the chemistry and function really of those microbes that live there.  And in our work we’ve determined … bacteria there is more horizontal transfer. And so it’s beneficial then to have secondary metabolism in proximity … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t …

… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …

… function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … those not readily achievable without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at … Proposers are encouraged to review the JGI’s sample requirements . Samples that are not available …