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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the … space that they occupy on a global scale, it’s less than 1% of the coastal area worldwide. But when you then look at …
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Uncovering Novel Genomes from Earth’s Microbiomes
… a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … Using this massive dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …
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Pinning Down a Piece of Photosynthesis
… longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts that …
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A Collaboration to Improve Plant Genome Annotations Across Species
Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team set out to characterize the … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv … resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as … Deputy post by  Nick Everson , the person Ray hired in 2007 to serve as JGI’s Business Manager. In 2012, Nick jumped …
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Evolution of a Fungal Gene Expression Regulator
… least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … the US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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Tracking the Origins of Methane-Producing Microbes
… that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated … viruses, while the genomes of large viruses may be only 10 times larger. And yet, while they are found everywhere, … as a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 …
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Training the Next Generation of Talent
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JGI Accepts 17 Proposals for Community Science Program
… and how ecosystems are adapting to stresses. A total of 17 proposals have been approved through the annual Community … Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. Many …
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