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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … University of Texas at Austin, HudsonAlpha, and the JGI. Building off this work, researchers at three DOE Bioenergy …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI … The Chief Informatics Officer provides advice and strategic direction for …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic blueprints for … the team mapped how the bacterium redirects its energy, building blocks and regulatory machinery toward chemical … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after … targeting helpful bacteria, viruses and fungi. Overall, better understanding of a recovering soil microbiome … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete … is through a method called Multiple Displacement Amplification, and most genomes that were acquired through it were … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… environments. The Science Cyclic di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … network that drives bacterial colonization and motility. By building on a previously developed combined approach, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities … of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH … and Microbiomes (IMG/M) system. The Program aims to better understand the viruses that coexist with humans – the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in length, while the previous version had an average of 25,000 bp pieces. That’s the difference between assembling a …
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