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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and … BS in Electrical Engineering, University of New South Wales, …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: hot spring-dwelling bacteria from the phylum C hloroflexota . … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community Science …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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Filling in the Plant Tree of Life
… we understood plants and how they adapt to their ever-changing environments better? We could unlock new innovations to … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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JGI Announces 2026 Functional Genomics Recipients
… Pictured from left: [Above] Hanin Alzubaidy, Markus Covert, Sheel C. Dodani, Kathryn Fixen, … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI's biodesign and omics … in support of advancing the bioeconomy. This year's projects span diverse areas of  biological research to …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that … lipids, metabolites, it gets to the point where sometimes more label can be detrimental if you got up to too … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of …
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