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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … and published in the journal Science . At the time, the project was co-led by Daniel Rokhsar, head of the JGI’s … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team … 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … the paper was published in 2014, it has been cited 1,025 times and the seemingly humble common bean has fueled …
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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, … annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data … exchange and assists with large scale computations on R&D projects. …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them archaea. The … communities collected. The team noticed some of the genomes diverged evolutionarily from other previously …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth … University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their microbial … its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a more global …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation … China (No. 92251302, 91951205, and 31970122). Part of this project was supported by a Natural Sciences and Engineering …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … Program; Genome Canada Large-Scale Applied Research Project Competition; NASA Exobiology; Graduate Women in …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is … test genetic hypotheses in species with large and complex genomes,” said Lovell. “However, new sequencing technologies …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of Energy (DOE) …
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