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Matt Blow
… analysis and develops automated pipelines for analysis of resequencing, transcriptome, epigenome and other functional … et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. …
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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … datasets becoming available but also complementary single-cell sorting and sequencing of viruses together with their unicellular …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have … help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … conditions. While scientists around the world were busy sequencing the human genome, an arms race was being waged. …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … and climate is estimated to be larger than any other single plant genus. Peatlands accumulate partially … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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A Natural Mechanism Can Turbocharge Viral Evolution
… step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … by the JGI, to uncover these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes … support from the EMERGE Institute (NSF #2022070). Sequencing of the Stordalen Mire samples used herein was …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship program between Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, … Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and data mining, empowering …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … of the male and female plants, each representing a single set of chromosomes, are available. The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to …
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JGI-USCCN Strain Sequencing Opportunity
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