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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the … team to associate climate adaptations with switchgrass biology, information that could be useful toward the DOE’s … sequence has improved in parallel. For example, the current version of the genome is assembled into sequences of 5.5 …
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Finding the Fermenters
… National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … National Institute of Food and Agriculture grant 2018-67015-27495, the United States Department of Agriculture National … Publication …
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Mapping Heat Resistance in Yeasts
… closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the challenges in understanding wild … revealed that at each of eight genes, having a single version from S. cerevisiae was sufficient to promote growth at high temperature, and having the version from S. paradoxus led to very poor heat tolerance. …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial populations in oxygen …
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User Advisory Committees
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute … methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at … Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & Technology- Agriculture” 2021-  Weill Neurohub …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … Microbiome Data Collaborative ( NMDC ) and the DOE Systems Biology Knowledgebase ( KBase ) — and aims to extend these …
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Soil virus offers insight into maintaining microorganisms
… domains of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down … similarities with bacterial counterparts suggest the viral versions of the chitosanases originated in bacteria before being modified into virus-specific versions through genetic drift and diversification …
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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JGI Scientists Pen Genome Watch Articles
… made their debut writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) … writing for the column Genome Watch in  Nature Reviews Microbiology .  The latest article, published January 27, is …
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Metagenome Program
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A Natural Mechanism Can Turbocharge Viral Evolution
… the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, throws open the doors to characterizing how DGRs work at the … of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This research used resources of the National …
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