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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for … eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … tree, had a gene annotation completement level of 93.8%. The 2025 assembly has a gene annotation completement …
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How Filamentous Fungi Sense Food
… crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach … is of interest for bioenergy researchers looking to improve the industrial production of sustainable biofuels and … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  … air is a rich source of the sulfur they need to grow and divide. Similar to the bacterial enzymes that fix nitrogen — … how such inter-Facility collaborations through the Genomes to Structure and Function focus area of the JGI’s …
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant species … test genetic hypotheses in species with large and complex genomes,” said Lovell. “However, new sequencing technologies … is direct evidence of climatic adaptation. The team’s database of genes that underlie adaptation to climate …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the … public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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