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… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying … communities and their interactions, the Program aims to unlock the fundamental principles that govern ecosystem …

… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI … Proposers are encouraged to review the JGI’s sample requirements . Samples that are … For general questions, please reach out to Christa Pennacchio, Project Management Office. For …

… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological … Proposers are encouraged to review the JGI’s sample requirements . Samples that are … For general questions, please reach out to Christa Pennacchio, Project Management Office. For …

… help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . … the multiple advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … has adapted to conditions such as UV irradiation, heavy metal contamination, and drought. The moss genomes’ …

… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I … just did a low-resolution shotgun pass where we sequenced 500 runs. And then we used those to find gene clusters in … be difficult to write a grant on right now like another P450 or glycosyltransferase. You probably would have a hard …

… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … statistics across genomes (see video on comparative tools) 5.  Q: Is there any programmatic access to the portal? Or … While are still working on finalizing the tree and related publication the tree is still in development and not …

… portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative … Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 images of crystalized samples cloned and synthesized … of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down chitin. A …

… (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, … of Energy is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing Environments) project, assessing …

… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication occurs within a single …

… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s contributions as reviewing …

… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … One shared gene stood out in particular: a cytokinin response regulator that was expanded in a palindrome and … This gene regulates the expression of other genes in response to cytokinin, a key plant hormone, making it a …

… efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil … machinery toward chemical production — a coordinated response that had never been mapped in this detail before.   … begins on the genome. This revealed a sweeping cellular response: The bacterium absorbs potassium ions to balance …