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Three Join the JGI User Executive Committee
… UEC. As a user of the JGI and the Environmental Molecular Sciences Laboratory, another DOE user facility, she will … laboratory researchers. This will help the JGI shape its programs, capabilities, and resources to best meet the broad base of user community needs. …
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A Plant Root Atlas for Tracking Developmental Trajectories
… datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader perspective:  …
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant … with GENESPACE, a computational tool for comparative genomics.   With a more robust reference genome, researchers …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive … topics that the JGI supports that advance DOE Office of Science Biological and Environmental Research (BER) … worked closely with both the Fungal & Algal Program and the Microbial Program over the past decade in gene regulatory …
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Mining Metagenomes for Cas Proteins
… at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools … of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific Computing …
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Decoding Yellowstone’s Microbial Mats
… Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered … new technologies, and made a few discoveries about the microbial mat denizens.  …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … seed dispersal in wild populations for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene … group. It’s just a massive amount of sequencing.”  A Resource for Many Applications Kellogg noted that C4 crops have …
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Soil virus offers insight into maintaining microorganisms
… identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … second only to cellulose.  Chitin is also a common food source for microbes living within soil. So, the chitosanase …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — … secondary metabolites and associated genes are great resources for bioremediation, new agricultural applications or … studied in plant research laboratories and plant biology courses across the globe for insights into reproductive, …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … complex biological and environmental systems. We optimize our service to the community through responsibly managing …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… Michael Brandt (Operations Deputy), Horst Simon (Science Deputy), Jeff Blair (Chief Laboratory Counsel) and … in his event remarks. “I feel that is something crucial to our success, and Ray has been that. That person needs … to the ever-shifting landscape of funding Federal for programs, noted that “Ray is someone who just will get it …
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A Complex Confection Decoded: Sugarcane Reference Genome
… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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