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Mapping the Earth’s Hidden Fungal Kingdom
… Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of tackling … that thousands can be sequenced and compared using modern technologies. The JGI recognized this opportunity early, developing standardized workflows to …
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Matt Blow
… scientist on projects to develop functional genomic technologies and to understand genome function in bacteria. … Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  … Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for thousands of bacterial genes of …
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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
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Simon Roux
… to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of … microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established and currently leads the Viral … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… at the bottom.  Perhaps most notably, JGI’s Microbial Program head Tanja Woyke and her colleagues harnessed the … more than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications for developing economies
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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The Case for Conservation
… assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact Found on all … so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how lessons from … sequence the fire moss genomes ran the gamut of sequencing technologies, from making a bacterial artificial chromosome …
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Rex Malmstrom
… molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . … Awards and Honors …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group … DOE Office of Science Graduate Student Research (SCGSR) program . Her research project, “Microbial Community … versions appear side-by-side below: Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship …
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A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis
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