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Marine Microbe Contains Multitudes
… cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence … (Berkeley Lab), through the JGI Community Science Program . The metagenomes were also processed using the …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of … establishment and maintenance is supported by the US DOE, Office of Science, Office of Biological and …
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Taking Stock of the Known and Unknown Microbial Space
… hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Tracing the Evolution of Shiitake Mushrooms
… at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling … Genome and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome Institute, a Senior … Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the …
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A Natural Mechanism Can Turbocharge Viral Evolution
… a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … a fishing line, without harming the rest of the microbial community. The study’s publicly available dataset gives … support from the EMERGE Institute (NSF #2022070). Sequencing of the Stordalen Mire samples used herein was …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, … The JGI sequenced the shrub willows through the  Community Science Program , using long-read sequencing to assemble the repetitive areas of the complete …
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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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JGI Workshops at PAG
… field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you can use the KBase system to accelerate …
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Emiley Eloe-Fadrosh
… viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore Foundation as … Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data Collaborative … et al. 2023. Cohort-based learning for microbiome research community standards. Nat Microbiol . 8(5):751-753. Nayfach …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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