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IMG/VR
… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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iPHoP: A Matchmaker for Phages and their Hosts
… before, in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost plant-microbe … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , researchers describe a strategy to recover high value products … The work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … Data Collaborative.  This award recognizes distinguished research achievements that support open data practices, …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint … proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of both … The JGI supports remote users. Users conduct experiments in their own labs or collect field samples. Depending on the …
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Learning to Look
… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … “We can now start inquiring into their impact on microbial communities in the environment and also those associated …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to reconstruct … particularly from incredibly complex soil microbial communities, is crucial to understanding how these microbes …
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Understanding Wildfire Recovery, Starting in Soil
… which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … this kind of analysis is the ability to see how microbial communities interact; beyond bacteria, these samples … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … sustainable biofuel production. The JGI published a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 … with Merchant’s lab and second author on the paper, studied viral genetics and gene therapy before self-training himself …
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The JGI announces 2024 awardees for our Community Science Program annual call
… our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals … who heads JGI’s User Programs. “These PIs have proposed research that addresses various important scientific questions … relevant to the DOE’s mission, and I look forward to seeing their outcomes.” The annual CSP call is focused on …
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Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics
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