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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple …
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Soil virus offers insight into maintaining microorganisms
… AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … distinct from similar proteins found in archaea, fungi or bacteria. Certain similarities with bacterial counterparts … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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Cataloging the Microbes that Manage the Health of River Systems
… program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their … group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” The study, …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… selection of studies these busy bees contributed to:  Giant bacteria visible to the naked eye :  Natalia Ivanova and  … Single Cells Group helped better-understand what the sulfur-oxidizing, carbon fixing bacterium was doing in the … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … and computational approaches, more and more virus sequences are being recovered and identified from … key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by viruses in their …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Eelgrass Proves to Be Much Younger Than We Thought
… locations.  One group investigated changes in protein sequences, while others analyzed single point mutations … Facility at Lawrence Berkeley National Laboratory, provided sequence resources — including the eelgrass genome assembly …
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Leo Baumgart
… to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate … Matthew J. Blow et al. "Persistence and plasticity in bacterial gene regulation." Nature methods 18, no. 12 …
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Ian Blaby
… worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of sequence-based gene function. … site ties heme availability to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or diatoms. Through the … interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and …
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