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… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural shift … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … of methanogenesis and the presence of methanogens in nearly all types of anaerobic environments suggest the … the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an …

… Collaboratory encourages user engagement. The Science In addition to the core set of "primary … public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …

… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … a Nature Communications paper that builds off their early collaborations that could help crop breeders and … possible candidate ancestors are available. Our method clearly identifies the four subgenomes based on non-genic …

… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were nearly cleared of contamination. By 2020, the water was at …

… growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. Studying … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, …

… DAN: You’re listening to the US. .Department of Energy Joint Genome … have no extra genes hanging around, they still dedicate 20-30% of their genome to secondary metabolism. So it’s very … geography doesn’t matter as much. But, you know, there’s clearly some, you know, equivalent to punctuated equilibrium …

… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … those selected by the DOE Office of Science as part of the Early Career Research Program (ECRP). His project, … function. He was one of the eight JGI researchers on the 2023 Highly Cited Researchers list, and has appeared on the …

… has been evolving for 82 million years, making it nearly 30 times older than the entire human lineage. Yet despite … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …

… The JGI is leveraging its current partnerships to offer new capabilities and … different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …

… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … ago and has been well-studied by many researchers for nearly five decades. In these frigid systems, where organisms … found that the green sulfur bacteria population spiked to 83%, only to dramatically fall to 1% in early spring and …

… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … of virophages.” Lead author David Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & …