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… In honor of the JGI's 25th anniversary in 2022, we have revisited a … journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, …

… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … Zhong Wang Project: “ Improving biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting …

… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed …

… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … Oak Ridge, Tennessee. Recently, Lawrence, in collaboration with researchers from ORNL, Lawrence Berkeley National … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …

… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue … in is actually seeing whether we could go into the genomes and predict what the natural product might actually …

… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully …

… The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … were retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a community resource for comparative analysis and annotation of all publicly available genomes in three …

… Interns contributed to a number of projects, from refining lab protocols at the bench to … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell Project:  Machine Learning Applications in Gene Annotation Masato Terasaki Mentor: Yumary Vasquez Project:  …

… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups …

… By studying the structure and function of a cyanobacterial protein, researchers have new insights … cycle carbon in changing conditions. The products of photosynthesis are easy to point out. Plants, algae and … pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: surprising dependencies, …

… Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … to learn more about our seven science program — their areas of focus, major initiatives and more.  …

… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … and we talk about an ongoing project I’ve been working with him on as an exploration into the secondary metabolism … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …